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PVA and Modeling Case Studies:
Applications of RAMAS to Specific Cases

Plants

  1. Keith, D.A, H.R. Akçakaya, W. Thuiller, G.F. Midgley, R.G. Pearson, S.J. Phillips, H.M. Regan, M.B. Araújo, T.G. Rebelo. 2008. Predicting extinction risks under climate change: coupling stochastic population models with dynamic bioclimatic habitat models. Biology Letters (in press).
  2. Keith, D. A., M. G. Tozer, T. J. Regan, and H. M. Regan. 2007. The persistence niche: what makes it and what breaks it for two fire-prone plant species. Australian Journal of Botany 55:273-279.
  3. Yates, C. J., P. G. Ladd, D. J. Coates, and S. McArthur. 2007. Hierarchies of cause: understanding rarity in an endemic shrub Verticordia staminosa (Myrtaceae) with a highly restricted distribution. Australian Journal of Botany 55:194-205.
  4. Schleuning, M. 2007. Spatiotemporal variation in the demography of perennial plants. Dissertation, Department of Biology, University of Marburg.
  5. Maschinski, J., and J. Duquesnel. 2006. Successful reintroductions of the endangered long-lived Sargent's cherry palm, Pseudophoenix sargentii, in the Florida Keys. Biological Conservation 134: 122-129.
  6. Colling, G., and D. Matthies. 2006. Effects of habitat deterioration on population dynamics and extinction risk of an endangered, long-lived perennial herb (Scorzonera humilis). Journal of Ecology 94:959-972.
  7. Bossuyt, B. and O. Honnay. 2006. Interactions between plant life span, seed dispersal capacity and fecundity determine metapopulation viability in a dynamic landscape. Landscape Ecology 21:1195-1205.
  8. Zotz, G., and G. Schmidt. 2006. Population decline in the epiphytic orchid Aspasia principissa. Biological Conservation 129: 82-90.
  9. Meyer, S. E., D. Quinney, and J. Weaver. 2006. A stochastic population model for Lepidium papilliferum (Brassicaceae), a rare desert ephemeral with a persistent seed bank. American Journal of Botany 93:891-902.
  10. Erschbamer, B., and E. Winkler. 2005. Long-term population development and spatial pattern of Carex curvula subspecies. Arctic Antarctic and Alpine Research 37:189-196.
  11. Zotz, G., S. Laube, and G. Schmidt. 2005. Long-term population dynamics of the epiphytic bromeliad, Werauhia sanguinolenta. Ecography 28:806-814.
  12. Endels, P., H. Jacquemyn, R. Brys, and M. Hermy. 2005. Rapid response to habitat restoration by the perennial Primula veris as revealed by demographic monitoring. Plant Ecology 176:143-156.
  13. Rodriguez-Buritica, S., M. A. Orjuela, and G. Galeano. 2005. Demography and life history of Geonoma orbignyana: An understory palm used as foliage in Colombia. Forest Ecology and Management 211:329-340.
  14. Adams, V. M., D. M. Marsh, and J. S. Knox. 2005. Importance of the seed bank for population viability and population monitoring in a threatened wetland herb. Biological Conservation 124:425-436.
  15. Keith, D. 2004. Australian Heath Shrub (Epacris barbata): Viability under Management Options for Fire and Disease. In: Species Conservation and Management: Case Studies.
  16. Bekessy, S. et al. 2004. Monkey Puzzle Tree (Araucaria araucana) in Southern Chile: Effects of Timber and Seed Harvest, Volcanic Activity, and Fire. In: Species Conservation and Management: Case Studies.
  17. Regan, H. and T. D. Auld. 2004. Australian Shrub Grevillea caleyi: Recovery through Management of Fire and Predation. In: Species Conservation and Management: Case Studies.
  18. Drechsler M. 2004. Banksia goodii in Western Australia: Interacting Effects of Fire, Reproduction, and Plant Growth on Viability. In: Species Conservation and Management: Case Studies.
  19. Albert, M. J., D. Draper and J. M. Iriondo. 2004. Erodium paularense in Spain: Relevance of Microhabitats in Population Dynamics. In: Species Conservation and Management: Case Studies.
  20. Ettl, G. J. and N. Cottone. 2004. Whitebark Pine (Pinus albicaulis) in Mt. Rainier National Park, Washington, USA: Response to Blister Rust Infection. In: Species Conservation and Management: Case Studies.
  21. Brown, K. 2004. Linking population and ecosystem ecology through biological invasions: the invasion of Syzygium jambos in Puerto Rico. Ph. D. Dissertation, Department of Ecology and Evolution, Stony Brook University.
  22. Vicens, M.; J. Gradaille, and J. M.Iriondo. 2004. Demography, population structure and dynamics of Thymus herba-barona subsp. bivalens (Lamiaceae). Paper presented at the 4th European Conference on the Conservation of Wild Plants. Valencia (Spain), 17-20 September 2004.
  23. Tierney, D. 2004. Towards an understanding of population change for the long-lived resprouting tree Angophora inopina (Myrtaceae). Australian Journal of Botany 52:31-38.
  24. Davelos, A. L. and A. M. Jarosz. 2004. Demography of American chestnut populations: effects of a pathogen and a hyperparasite. Journal of Ecology 92:675–685.
  25. Guedje, N. M., J. Lejoly, B. A. Nkongmeneck, and W. B. J. Jonkers. 2003. Population dynamics of Garcinia lucida (Clusiaceae) in Cameroonian Atlantic forests. Forest Ecology and Management 177:231-241.
  26. Osunkoya, O. O. 2003. Two-sex population projection of the endemic and dioecious rainforest shrub, Gardenia actinocarpa (Rubiaceae). Biological Conservation 114: 39-51.
  27. Meekins, J.F., and McCarthy, B.C. 2002. Effect of population density on the demography of an invasive plant (Alliaria petiolata, Brassicaceae) population in a southeastern Ohio forest. American Midland Naturalist 147(2):256-278.
  28. Kaye, T.N. 2002. Population monitoring for Horkelia congesta ssp. congesta at the long tom area of critical environmental concern. 2002 Progress Report. January 2002. Institute for Applied Ecology.
  29. Blumenthal, D., and N. Jordan. 2001. Weeds in field margins: a spatially explicit simulation analysis of Canada thistle population dynamics. Weed Science 49 (4): 509-519.
  30. Brewer, J. S. 2001. A demographic analysis of fire-stimulated seedling establishment of Sarracenia alata (Sarraceniaceae). American Journal of Botany 88:1250-1257.
  31. Cole, R. G., R. C. Babcock, and V. Travers. 2001. Distributional expansion of Carpophyllum flexuosum onto wave-exposed reefs in north-eastern New Zealand. New Zealand Journal of Marine and Freshwater Research 35:17-32.
  32. Kaye, T. N., K. L. Pendergrass, K. Finley, and J. B. Kauffman. 2001. The effect of fire on the population viability of an endangered prairie plant. Ecological Applications 11:1366-1380.
  33. Schwartz, M. W., S. M. Hermann, and P. J. Van Mantgem. 2000. Population persistence in Florida torreya: Comparing modeled projections of a declining coniferous tree. Conservation Biology 14:1023-1033.
  34. Oostermeijer, J. G. B. 2000. Population viability analysis of the rare Gentiana pneumonanthe: the importance of genetics, demography and reproductive biology. Pages 313-334 in A. G. Young and G. M. Clarke, editors. Genetics, demography and viability of fragmented populations. Cambridge University Press, Cambridge, United Kingdom.
  35. Drechsler M., et al. 1999. Modelling the persistence of an apparently immortal Banksia species after fire and land clearing. Biological Conservation 88:249-259.
  36. Erschbamer, B., U. Buratti, and J. Winkler. 1998. Long-term population dynamics of two Carex curvula species in the central Alps on native and alien soils. Oecologia 115:114-119.
  37. Menges, E. S., and R. W. Dolan. 1998. Demographic viability of populations of Silene regia in midwestern prairies: relationships with fire management, genetic variation, geographic location, population size and isolation. Journal of Ecology 86:63-78.
  38. Maschinsky, J., R. Fyre and S. Rutman. 1997. Demography and population viability of an endangered plant species before and after protection from trampling. Conservation Biology 11:990-999.
  39. Kephart, S. R., and C. Paladino. 1997. Demographic change and microhabitat variability in a grassland endemic, Silene douglasii var oraria (Caryophyllaceae). American Journal of Botany 84:179-189.
  40. Watson, I. W., M. Westoby, and A. M. Holm. 1997. Continuous and episodic components of demographic change in arid zone shrubs: models of two Eremophila species from western Australia compared with published data on other species. Journal of Ecology 85:833-846.
  41. Ratsirarson, J., J. A. Silander, and A. F. Richard. 1996. Conservation and management of a threatened Madagascar palm species, Neodypsis decaryi, Jumelle. Conservation Biology 10:40-52.
  42. Okland, R. H. 1995. Population biology of the clonal moss Hylocomium splendens in Norwegian boreal spruce forests .1. Demography. Journal of Ecology 83:697-712.
  43. Burgman, M.A. and V.A. Gerard. 1989. A stage-structured, stochastic population model for the giant kelp, Macrocytis pyrifera. Marine Biology 105:15-23.

    Invertebrates

  44. Moe. S.J., A.B. Kristoffersen, and N.C. Stenseth. 2008. Lucilia sericata laboratory populations: Toxicant effects modified by stage-specific density dependence and stochasticity. In: Akçakaya, H.R., J.D. Stark, and T.S. Bridges (editors). Demographic Toxicity: Methods in Ecological Risk Assessment. Oxford University Press, New York.
  45. Klok, C. 2008. Earthworms (Lumbricus rubellus) in northwestern Europe: Sublethal effects of copper on population viability. In: Akçakaya, H.R., J.D. Stark, and T.S. Bridges (editors). Demographic Toxicity: Methods in Ecological Risk Assessment. Oxford University Press, New York.
  46. Stark, J.D. 2008. Water flea Daphnia pulex: Population recovery after pesticide exposure. In: Akçakaya, H.R., J.D. Stark, and T.S. Bridges (editors). Demographic Toxicity: Methods in Ecological Risk Assessment. Oxford University Press, New York.
  47. Coutellec, M-A., T. Caquet, and L. Lagadic. 2008. Lymnaea stagnalis: The effects of experimental demographic reduction on population dynamics. In: Akçakaya, H.R., J.D. Stark, and T.S. Bridges (editors). Demographic Toxicity: Methods in Ecological Risk Assessment. Oxford University Press, New York.
  48. Palmqvist, A. and V.E. Forbes. 2008. Demographic effects of the polycyclic aromatic hydrocarbon fluoranthene on two sibling species of the polychaete Capitella capitata. In: Akçakaya, H.R., J.D. Stark, and T.S. Bridges (editors). Demographic Toxicity: Methods in Ecological Risk Assessment. Oxford University Press, New York.
  49. Bridges, T.S., H.R. Akçakaya, and B. Bunch. 2008. Leptocheirus plumulosus in the upper Chesapeake Bay: Sediment toxicity effects at the metapopulation level. In: Akçakaya, H.R., J.D. Stark, and T.S. Bridges (editors). Demographic Toxicity: Methods in Ecological Risk Assessment. Oxford University Press, New York.
  50. Simonini, R., D. Prevedelli, and M. Mauri. 2008.Applications of life table response experiments to the evaluation of toxicant effects at the population level with the polychaete Dinophilus gyrociliatus. In: Akçakaya, H.R., J.D. Stark, and T.S. Bridges (editors). Demographic Toxicity: Methods in Ecological Risk Assessment. Oxford University Press, New York.
  51. US Fish and Wildlife Service. 2008. Biological Opinion on the U.S. Army Corps of Engineers, Mobile District, Revised Interim Operating Plan for Jim Woodruff Dam and the Associated Releases to the Apalachicola River. Panama City Field Office, Florida.
  52. Bejarano, A.C., G.T. Chandler, L. He, and B.C. Coull. Individual to population level effects of South Louisiana crude oil water accommodated hydrocarbon fraction (WAF) on a marine meiobenthic copepod. Journal of Experimental Marine Biology and Ecology [in press]
  53. Berezovskaya, F., G. Karev, and T.W. Snell. 2005. Modeling the dynamics of natural rotifer populations: Phase-parametric analysis. Ecological Complexity 2:395-409.
  54. Schtickzelle, N., J. Choutt, P. Goffart, V. Fichefet, and M. Baguette. 2005. Metapopulation dynamics and conservation of the marsh fritillary butterfly: Population viability analysis and management options for a critically endangered species in Western Europe. Biological Conservation 126(4): 569-581.
  55. Bejarano, A.C., G.T. Chandler, and A.W. Decho. 2005. Influence of natural dissolved organic matter (DOM) on acute and chronic toxicity of the pesticides chlorothalonil, chlorpyrifos and fipronil on the meiobenthic estuarine copepod Amphiascus tenuiremis. Journal of Experimental Marine Biology and Ecology 321 (1): 43-57
  56. Schtickzelle, N., M.F. WallisDeVries, and M. Baguette. 2005. Using surrogate data in population viability analysis: the case of the critically endangered cranberry fritillary butterfly. Oikos 109: 89-100.
  57. Ranius, T., and J. Hedin. 2004. Hermit Beetle (Osmoderma eremita) in a Fragmented Landscape: Predicting Occupancy Patterns. In: Species Conservation and Management: Case Studies.
  58. Bergman, K.-O. and O. Kindvall. 2004. Woodland Brown Butterfly (Lopinga achine) in Sweden: Viability in a Dynamic Landscape Maintained by Grazing. In: Species Conservation and Management: Case Studies.
  59. Milner-Gulland, E. J., et al. 2004. The tapeworm Echinococcus multilocularis in Kazakhstan: Transmission Dynamics in a Patchy Environment. In: Species Conservation and Management: Case Studies.
  60. Regan, T.J., et al. 2004. Carnivorous Land Snail Tasmaphena lamproides in Tasmania: Effects of Forest Harvesting. In: Species Conservation and Management: Case Studies.
  61. Kindvall, O. 2004. Bush Cricket Metrioptera bicolor in Sweden: Estimating Inter-patch Dispersal Rates. In: Species Conservation and Management: Case Studies.
  62. Omland, K. and C. Elphick. 2004. Tiger Beetle (Cicindela puritana) on the Connecticut River: Habitat Management and Translocation Alternatives. In: Species Conservation and Management: Case Studies.
  63. Fox, J. C., et al. 2004. Giant Velvet Worm (Tasmanipatus barretti) in Tasmania, Australia: Effects of Planned Conversion of Native Forests to Plantations. In: Species Conservation and Management: Case Studies.
  64. Schtickzelle, N. and M. Baguette. 2004. Metapopulation viability analysis of the bog fritillary butterfly using RAMAS/GIS. Oikos 104: 277-290.
  65. Bernardini, C. and C.D. Russo. 2004. A general model for the life cycle of Dolichopoda cave crickets (Orthoptera: Rhaphidophoridae). European Journal of Entomology 101:69–73.
  66. Tews, J. 2004. Population Viability of the Behr’s Hairstreak in the South Okanagan Valley, BC, Canada. Prepared by ELUTIS Modelling and Consulting Inc. for Environment Canada, May 2004. 21 p.
  67. Sawchik J, Dufrene M, Lebrun P, Schtickzelle N, Baguette M. 2002. Metapopulation dynamics of the bog fritillary butterfly: modelling the effect of habitat fragmentation. Acta Oecologica 23: 287-296.
  68. Chandler, G., T. Cary, D. Volz, S. Walse, J. Ferry, and S. Klosterhaus. 2004. Fipronil effects on estuarine copepod (Amphiascus tenuiremis) development, fertility, and reproduction: A rapid life-cycle assay in 96-well microplate format. Environmental Toxicology and Chemistry 23:117-124.
    Cary, T.L., G.T. Chandler, D.C. Volz, S.S Walse, J.L. Ferry. 2004. Phenylpyrazole insecticide fipronil induces male infertility in the estuarine meiobenthic crustacean Amphiascus tenuiremis. Environmental Science & Technology 38 (2): 522-528
    Chandler, G. T., T. L. Cary, A. C. Bejarano, J. Pender, and J. L. Ferry. 2004. Population consequences of fipronil and degradates to copepods at field concentrations: an integration of life cycle testing with Leslie matrix population modeling. Environmental Science & Technology 38:6407-6414.
  69. Bejarano, A. C., and G. T. Chandler. 2003. Reproductive and developmental effects of atrazine on the estuarine meiobenthic copepod Amphiascus tenuiremis. Environmental Toxicology and Chemistry 22:3009-3016.
  70. Baguette, M. G. Mennechez, S. Petit, N. Schtickzelle. 2003. Effect of habitat fragmentation on dispersal in the butterfly Proclossiana eunomia. Comptes Rendus Biologies 326 (2003) S200-S209.
  71. U.S. Army Corps of Engineers, Mussel Coordination Team. 2002. Definite Project Report and Environmental Assessment for Relocation Plan for the Endangered Higgins' Eye Pearlymussel (Lampsilis higginsii), Upper Mississippi river and Tributaries, Minnesota, Wisconsin, Iowa and Illinois.
  72. Barry, K.L. and C.D. Levings. 2002. Feasibility of using the RAMAS-Metapopulation model to assess the risk of a non-indigenous copepod (Pseudomarinus marinus) establishing in Vancouver Harbor from ballast water. Can. Tech. Rep. Fish. Aquat. Sci. 2401. 25 p
  73. Kuhn, A., W. R. Munns, J. Serbst, P. Edwards, M. G. Cantwell, T. Gleason, M. C. Pelletier, and W. Berry. 2002. Evaluating the ecological significance of laboratory response data to predict population-level effects for the estruarine amphipod Ampelisca abdita. Environmental Toxicology and Chemistry 21:865-874.
  74. Regan, T.J., et al. 2001. Modelling the impact of timber harvesting on a rare carnivorous land snail (Tasmaphena lamproides) in northwest Tasmania, Australia. Ecological Modeling 139:253-264.
    Taylor, R.J., et al. 2003. Impacts of plantation development, harvesting schedules and rotation lengths on the rare snail Tasmaphena lamproides in northwest Tasmania: a population viability analysis. Forest Ecology and Management 175:455-466.
  75. Spencer, M., N.S. Fisher, W.-X. Wang, S. Ferson. 2001. Temporal variability and ignorance in Monte Carlo contaminant bioaccumulation models: a case study with selenium in Mytilus edulis. Risk Analysis 21: 383-394.
  76. Kindvall, O. 2000. Comparative precision of three spatially realistic simulation models of meta-population dynamics. Ecological Bulletins 48:101-110.
  77. Kuhn, A., W. R. Munns, S. Poucher, D. Champlin, and S. Lussier. 2000. Prediction of population-level response from mysid toxicity test data using population modeling techniques. Environmental Toxicology and Chemistry 19:2364-2371.
  78. Gruttke, H. and H. Engelds. 1998. Metapopulation structure of Carabus problematicus in a fragmented landscape: significance of simulation results for nature conservation. Page 133-143 in I. Baumgartner, P. Brandmayr, and B. Manly (ed). Population and Community Ecology for Insect Management and Conservation: Proceedings of the Ecology and Population Dynamics Section/20th International Congress, Florence, 25-31 August 1998. A.A.Balkerna, Rotterdam, Netherlands.
  79. Akçakaya, H. R. and B. Baur. 1996. Effects of population subdivision and catastrophes on the persistence of a land snail metapopulation. Oecologia 105:475-483.

    Fishes

  80. Spromberg, J.A. and L.L. Johnson. 2008. Potential effects of freshwater and estuarine contaminant exposure on lower Columbia River chinook salmon (Oncorhynchus tshawytscha) populations. In: Akçakaya, H.R., J.D. Stark, and T.S. Bridges (editors). Demographic Toxicity: Methods in Ecological Risk Assessment. Oxford University Press, New York.
  81. Nacci, D.E., S. Walters, T. Gleason, and W.R. Munns, Jr. 2008. Using a spatial modeling approach to explore ecological factors relevant to the persistence of an estuarine fish (Fundulus heteroclitus) in a PCB-contaminated estuary. In: Akçakaya, H.R., J.D. Stark, and T.S. Bridges (editors). Demographic Toxicity: Methods in Ecological Risk Assessment. Oxford University Press, New York.
  82. Hanson, N. 2008. Endocrine disruption in eelpout (Zoarces viviparus) on the Swedish Baltic coast: Population-level effects of male-biased broods. In: Akçakaya, H.R., J.D. Stark, and T.S. Bridges (editors). Demographic Toxicity: Methods in Ecological Risk Assessment. Oxford University Press, New York.
  83. Landis, W.G. 2008. Application of population modeling to a causal analysis of the decline the Cherry Point Pacific herring (Clupea pallasi) stock. In: Akçakaya, H.R., J.D. Stark, and T.S. Bridges (editors). Demographic Toxicity: Methods in Ecological Risk Assessment. Oxford University Press, New York.
  84. Chaumot, A. and S. Charles. 2008. Pollution, stochasticity, and spatial heterogeneity in the dynamics of an age-structured population of brown trout living in a river network. In: Akçakaya, H.R., J.D. Stark, and T.S. Bridges (editors). Demographic Toxicity: Methods in Ecological Risk Assessment. Oxford University Press, New York.
  85. Winfield, I.J., J.M. Fletcher, and J.B. James. 2007. Modelling the impacts of water level fluctuations and predation by cormorants (Phalacrocorax carbo) on the population dynamics of whitefish (Coregonus lavaretus) in Haweswater, U.K. Advances in Limnology 60: 277-284.
  86. Chung, L. C., H. J. Lin, S. P. Yo, C. S. Tzeng, and C. H. Yang. 2007. Stage-structured population matrix models for the Formosan landlocked salmon (Oncorhynchus masou formosanus) in Taiwan. Raffles Bulletin of Zoology. Supplement No. 14:151-160.
  87. Godbout, L., J.R. Irvine, C.C. Wood, C. Fu, and G. Jamieson. 2004. Critical Habitat Case Study - Sakinaw Lake Sockeye Salmon. Canadian Science Advisory Secretariat Research Document 2004/116.
  88. Ruckelshaus, M., et al. 2004. Chinook Salmon (Oncorhynchus tsawytscha) in Puget Sound: Effects of Spatially Correlated Catastrophes on Persistence. In: Species Conservation and Management: Case Studies.
  89. Nichol, S. and C. Todd. 2004. Trout Cod (Muccullochella macquariensis) in the Murray River, Southeast Australia: Prioritizing Rehabilitation Efforts. In: Species Conservation and Management: Case Studies.
  90. Cadrin, S. and D. Hart. 2004. Yellowtail Flounder (Limanda ferruginea) off the Northeastern United States: Implications of Movement among Stocks. In: Species Conservation and Management: Case Studies.
  91. Smedbol, R.K., and R.L. Stephenson. 2004. Atlantic Herring (Clupea harengus) in the Northwest Atlantic Ocean: Dynamics of Nested Population Components under Several Harvest Regimes. In: Species Conservation and Management: Case Studies.
  92. Wood, C.C., and Caihong Fu. 2004. Pacific Herring (Clupea pallasi) in Canada: Generic Framework for Evaluating Conservation Limits and Harvest Strategies. In: Species Conservation and Management: Case Studies.
  93. Wanzenboeck, J. 2004. European Mudminnow (Umbra krameri) in the Austrian Floodplain of the River Danube: Conservation of an Indicator Species for Endangered Wetland Ecosystems in Europe. In: Species Conservation and Management: Case Studies.
  94. Englert, T.L. and J.A.D. Burnett. 2003. A RAMAS population model of Winter Flounder in Mount Hope Bay. New England Estuarine Research Society (NEERS) meeting, May 2003, Fairhaven, MA
  95. Sundermeyer, M.A. and Y. Fan. 2003. Chapter 6 in "Framework for Formulating the Mount Hope Bay Natural Laboratory: A Synthesis and Summary". The School for Marine Science and Technology, University of Massachusetts Dartmouth.
  96. Root, K. V. 2002. Evaluating risks for threatened aquatic species: The shortnose sturgeon in the Connecticut River. In Dixon D., W. VanWinkle, D. Secor (eds.), Biology, Management and Protection of Sturgeon, American Fisheries Society.
  97. Brown D.K., A.A. Echelle, D.L. Propst, J.E. Brooks, and W.L. Fisher. 2001. Catastrophic wildfire and number of populations as factors influencing risk of extinction for Gila trout (Oncorhynchus gilae). Western North American Naturalist 61 (2): 139-148.
  98. Brook, B.W., J. J. O'Grady, A. P. Chapman, M. A. Burgman, H. R. Akçakaya, R. Frankham. 2000. Predictive accuracy of population viability analysis in conservation biology. Nature 404:385-387.
  99. Crutchfield, J. and S. Ferson. 2000. Predicting recovery of a fish population after heavy metal impacts. Environmental Science and Policy 3:S183-S189.
  100. Lantry, B.F. and D.J. Stewart. 2000. Population dynamics of rainbow smelt (Osmerus mordax) in Lakes Ontario and Erie: a modeling analysis of cannibalism effects. Can. J. Fish. Aquat. Sci. 57(8): 1594-1606.
  101. Williams L.R., et al. 1999. Simulation modeling of population viability for the leopard darter (Percidae : Percina pantherina). Southwestern Naturalist 44:470-477.
  102. Adams, Susan B. 1999. Mechanisms Limiting a Vertebrate Invasion: Brook Trout in Mountain Streams of the Northwestern USA. Ph.D. dissertation. University of Montana.
  103. Munns, W. R., D. E. Black, T. R. Gleason, K. Salomon, D. Bengtson, and R. GutjahrGobell. 1997. Evaluation of the effects of dioxin and PCBs on Fundulus heteroclitus populations using a modeling approach. Environmental Toxicology and Chemistry 16:1074-1081.
  104. Landahl, J.T., et al. 1997. Approaches for determining effects of pollution on fish populations of Puget Sound. Trans. Amer. Fish. Soc. 126:519-535.
  105. Bulak, J.S., D.S. Wethey, M.G. White III. 1995. Evaluation of managment options for a reproducing striped bass population in the Santee-Cooper system, South Carolina. North American Journal of Fisheries Management 15:84-94.
  106. Ferson, S., R. Akçakaya, L. Ginzburg and M. Krause. 1991. Use of RAMAS to Estimate Ecological Risk: Two Fish Species Case Studies. Technical Report EN-7176. Electric Power Research Institute, Palo Alto, California.
  107. Ginzburg, L.R., S.F. Ferson and H. R. Akçakaya. 1990. Reconstructibility of density dependence and the conservative assessment of extinction risk. Conservation Biology 4:63-70.

    Amphibians

  108. Tucker, W.T., J.D. Litzgus, S. Ferson, H.R. Akçakaya, M.E. Thompson, D.J. Fort, and J.P. Lortie. 2008. Population-level effects of PCBs on wood frogs (Rana sylvatica) breeding in vernal pools associated with the Housatonic River, Pittsfield to Lenoxdale, Massachusetts. In: Akçakaya, H.R., J.D. Stark, and T.S. Bridges (editors). Demographic Toxicity: Methods in Ecological Risk Assessment. Oxford University Press, New York.
  109. Karlsson, T., Betzholtz, P.-E. and Malmgren, J.C. 2007.Estimating viability and sensitivity of the great crested newt Triturus cristatus at a regional scale. Web Ecology 7: 63-76.
  110. Venier, L. A., J. L. Pearce, B. A. Wintle, and S. A. Bekessy. 2007. Future forests and indicator-species population models. Forestry Chronicle 83:36-40.
  111. Pellet, J., G. Maze, and N. Perrin. 2006. The contribution of patch topology and demographic parameters to population viability analysis predictions: the case of the European tree frog. Population Ecology 48:353-361.
  112. Griffiths, R. 2004. Great Crested Newts (Triturus cristatus) in Europe: Effects of Metapopulation Structure and Juvenile Dispersal on Population Persistence. In: Species Conservation and Management: Case Studies.
  113. Hatfield, J. etal. 2004. Houston Toad (Bufo houstonensis) in Bastrop County, Texas: The Need for Protecting Multiple Subpopulations. In: Species Conservation and Management: Case Studies.
  114. Bekessey, S., B. Wintle, J. Pearce, and L.Venier. 2004. A case study to evaluate dynamic landscape metapopulation models for sustainable forest management: the red-backed salamander. Spatial and temporal decision support tools for evaluating impact of forestry activities and wildfire disturbance on indicator species. Appendix 3.
  115. Conroy, S. D. S., and B. W. Brook. 2003. Demographic sensitivity and persistence of the threatened white- and orange-bellied frogs of Western Australia. Population Ecology 45:105-104.
  116. Funk, W.C. and L.S. Mills. 2003. Potential causes of population declines in forest fragments in an Amazonian frog. Biological Conservation 111:205-214.
  117. Applied Biomathematics and Woodlot Alternatives. 2003. A Stochastic Population Model Incorporating PCB Effects for Wood Frogs (Rana sylvatica) Breeding in Vernal Pools Associated with the Housatonic River - Pittsfield to Lenoxdale, Massachusetts. Report to U.S. Environmental Protection Agency, Region 1, Boston, Massachusetts. July 2003. 43 pp.
  118. Sutherland, G.D., J.S. Richardson, and F.L. Bunnell. 2000. Uncertainties linking tailed frog habitat and population dynamics with riparian management. Pp. 477-484 In: Darling, L.M. (editor) Proc. Biology and Management of Species and Habitats At Risk, Kamloops, B.C., 15 - 19 Feb. 1999. Vol. 2. BC Ministry of Environment, Lands and Parks, Victoria, B.C.
  119. Griffiths, R.A. and C. Williams. 2000. Modelling population dynamics of great crested newts: a population viability analysis. Herpetological Journal 10:157-163.
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  121. Whiting, M. J., J. R. Dixon, B. D. Greene, J. M. Mueller, O. W. Thornton, J. S. Hatfield, J. D. Nichols, and J. E. Hines. 2008. Population dynamics of the Concho Water Snake in rivers and reservoirs. Copeia 2008(2):438-445.
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  124. Berglind, S.-Å. 2004. Sand Lizard (Lacerta agilis) in Central Sweden: Modeling Juvenile Reintroduction and Spatial Management Strategies for Metapopulation Establishment. In: Species Conservation and Management: Case Studies.
  125. Chaloupka, M. 2004. Southern Great Barrier Reef Green Sea Turtle (Chelonia mydes) Stock: Consequences of Local Sex-biased Harvesting. In: Species Conservation and Management: Case Studies.
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  134. Walters, S., A. Kuhn, M.C. Nicholson, J. Copeland, S.A. Rego, and D.E. Nacci. 2008. Stressor impacts on common loons in New Hampshire, USA: a demonstration study for effects of stressors distributed across space. In: Akçakaya, H.R., J.D. Stark, and T.S. Bridges (editors). Demographic Toxicity: Methods in Ecological Risk Assessment. Oxford University Press, New York.
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  137. Koivula, K., V.-M. Pakanen, A. Ronka, and E.-J. Belda. 2008. Steep past and future population decline in an arctic wader: dynamics and viability of Baltic Temminck's stints Calidris temminckii. Journal of Avian Biology 39:329-340.
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  200. Mandujano, S. and Escobedo-Morelos, L. A. 2008. Population viability analysis of Howler Monkey (Alouatta palliata mexicana) in a highly fragmented landscape in Los Tuxtlas, Mexico. Tropical Conservation Science 1:43-62
  201. Guichon, M. L., and C. P. Doncaster. 2008. Invasion dynamics of an introduced squirrel in Argentina. Ecography 31:211-220.
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